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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … were a really common source for people to try to find new medicines for a long time. But we know now that most of … One of the organisms that I studied in the past were a group of bacteria called the Frankia . And so the Frankia …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to … to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, … Please review our FAQ in advance of contacting the PMO office.  …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance … Deputy include interacting with users seeking to exploit new genomic technologies and providing a vision for future …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … automated annotation due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, … RNA sequences. The next step applied metagenomic binning (grouping sequencing reads by their likely organism of …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway … Q1  (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to … Isotope Probing (SIP) Used for the identification of active groups of organisms within a community. Individual samples …
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Silver age of GOLD introduces new features
… a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … have spurred its growth and the continuing development of new components and capabilities. The most recent … all entities in the system. The JGI’s  Genomic Standards Group, which manages GOLD, communicates personally with …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and … of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical …   Learn more about our individual calls and other opportunities to work with the JGI …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the … community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual … available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … plant-microbe interactions, advancing efforts to create renewable energy sources and bolster agricultural resilience. … energy — and its implications for carbon sequestration, renewable energy and agricultural productivity. Research spans …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for … gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … the environment and, if so, to what extent.  “These new groups were discovered not by cultivation, like the original …
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