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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 18: A CSP Primer
… info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … proposals that are really multifaceted, that do request a diversity of the different capabilities that we have, that … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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User Support
… Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID account with two-factor … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of … and JGI staff with respect and consideration, valuing a diversity of views and opinions; Exercise tolerance for … Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …
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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … program, which stands for International Cooperative Biodiversity Groups, and it’s this great program funded by the … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s … assembly not only includes a full representation of the diversity present in R570 but shows the genomic effects of …
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Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens.
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … values, which guide the relationships we nurture in our workplace and seek to establish with our … the JGI user community and is responsible for providing input and advice on JGI policies and practices that …
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