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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in the … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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The Power of One, Amplified
… was similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… these microbes are equipped to do on the leaf surface. More specifically, they found that microbial community … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The team learned that some bacterial families carry genes for degrading monoterpenes such as α-pinene, as well …
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DAP-seq Drives Robust Mapping of Gene Regulation
… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … the creation of a vast resource: nearly 3,000 genome-wide binding maps for 360 transcription factors across 10 …
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Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these … the tools and data available through MycoCosm — a platform widely used across the research community — the work lowers …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … a global scale, it’s less than 1% of the coastal area worldwide. But when you then look at carbon storage, you’ll find …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The … researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For …
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Community-wide plasmid gene mobilization and selection
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These …
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Phage–host coevolution in natural populations
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