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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars support our …
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An analysis of codon bias in six red yeast species
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … evolutionary processes. The team then extended their analysis beyond the reference set, using two additional …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … synthesis, high-throughput screening methodologies, and statistical frameworks for inferring genotype to phenotype …
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Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … Voting is electronic and each user can vote for as many candidates as there are openings. Meetings The UEC will meet …
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