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Cataloging the Microbes that Manage the Health of River Systems
… resource that provides information at multiple scales from genes to the community level. The Impact Rivers are … analyses with their own data on the KBase platform, without having to download anything. The collaborative …
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DAP-seq Drives Robust Mapping of Gene Regulation
… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … start humming, gene regulation determines when and where genes are activated to sustain life’s processes.  … can pinpoint which transcription factors regulate specific genes in distinct cell types, shedding light on the …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… more efficient microbial factories. Identifying specific genes, regulatory elements and metabolic pathways that … building each compound are encoded in a dedicated set of genes called a biosynthetic gene cluster. However, most of …
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Evolution of a Fungal Gene Expression Regulator
… – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play a role in genome …
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Natural Prodcast Episode 15: Katherine Duncan
… I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … sequences, which are just incredible. We’ve looked at the genes, the biosynthetic gene clusters of those.And they’re … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Webinar: MycoCosm Tutorial
… While are still working on finalizing the tree and related publication the tree is still in development and not … 10.  Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? … this ID but in a different strain assembly (same organism) without having to blast the sequence in the other strain …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for field and … to develop a method for identifying polyploid subgenomes without needing to know the genomes of their ancestors. …
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Mining Metagenomes for Cas Proteins
… (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many … typical Cas12d proteins and were also found next to cas1 genes. Further analysis led to the identification of a new … with the Doudna lab on the discovery of thermostable Cas9 genes . The work also used resources at the National Energy …
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Game On: High School Students Drive Everglades Metagenomics Study
… motivated teacher willing to work and learn in a discipline without the expertise, along with the students.  The project … analysis.  The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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