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A Grass Model to Help Improve Giant Miscanthus
… sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient hybridization … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … two calls for proposals are open right now – large scale CSP and FICUS with March 24 and March 17 deadlines. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … biochemical diversity within secondary metabolites, expanding their potential applications in the bioeconomy …
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Natural Prodcast Episode 15: Katherine Duncan
… so I have an undergraduate in chemistry. Now when I was in fourth year, we had a choice to do an integrated master’s … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree … eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has 700-fold …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … Episode Transcript … This is the website for Episode 8 of JGI’s Natural Prodcast, which features our conversation with … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in … their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from Oak …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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