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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Natural Prodcast Episode 17: Cassandra Quave
… people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … And just because you do a field study in a location doesn’t mean that you’re going to have this massive economic … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … metabolite peptides. And there are two ways that nature does this. The more well-known secondary metabolism systems … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … we recognize and sticking another piece in, that usually doesn’t work, or if it does work, it doesn’t work as well, …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … special way to be able to hang out with a parent who then doesn’t become your parent anymore, but has this other role … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I …
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DOE JGI Metagenome Workflow
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Natural Prodcast Episode 20: Brian Bachmann
… I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll … Department, and Primary Investigator of the Laboratory for Biosynthetic Studies. In this episode, he describes his …
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Natural Prodcast Episode 15: Katherine Duncan
… has been really, really fun. Alison Takemura: And then does that also– well, I guess the question really is, do … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of … zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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Natural Prodcast Episode 19: Bill Fenical
… things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … concentration of calcium, and so on. And what difference does it make? The idea that you would say marine life make … media. So we went back and said, I don’t think we can use standard media. I think we have to devise our own culture …
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