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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … the National Institutes of Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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Plant Program
… for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … The Plant Program advances our understanding of plants’ biological and ecological roles to foster …
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … on JGI Advisory Committees are outlined in this Code of Conduct. … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … Total   700.0 1,144.186 163% 8,585 8,640 100.6% Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern … they can change position within a genome — into certain DNA segments has led the fern to its gene hoarding and those …
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