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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s … Yeah, that makes two of us. DAN UDWARY: So the audio quality was terrible. The hardware I was using was terrible. …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight …
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Genome Insider
… — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … with the JGI Plant Annotation pipeline, which provides high quality comparisons of these genomes within themselves and … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … been quite a lot of work in recent years to improve gender equality of people entering science programs. So actually, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … that most entries were looked at more at once, and so the quality – the data quality – was reasonably high. And yeah, it gave it gave us … that they need, and The Natural Product Atlas , a high-quality freely-available natural products structure database …
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