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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … LOI #2 … CSP New Investigator Submission … CSP Functional Genomics Submission … FICUS Example #1 … FICUS Example #2 …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … richardii show a long history of dynamic evolution and rapid changes in both genome content and structure following …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Natural Prodcast Episode 18: A CSP Primer
Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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