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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics. The …
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CSP Large Scale Call
… projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal … and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Microbial species delineation using whole genome sequences
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … that carry them were strikingly different in both size and organization: Mitochondrial genome size and structure varied …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … water. These vents are too deep in the sea to get any sunlight, and yet they still support a unique array of … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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User Support Analysis Group
… We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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