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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … to enable great science that will help solve energy and environmental challenges. Oh, the magical world of the cow …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … BA in Biology, Aristotle University of Thessaloniki, Greece PhD …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a really good friend of … Episode Transcript … the laboratory of Jo Handelsman at the University of Wisconsin-Madison. You can find the podcast on Apple , Google , …
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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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Metagenomics
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal …     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is …
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A roadmap for equitable reuse of public microbiome data
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled … public databases and recovered more than 3,000 others from environmental datasets. All of the annotations and data  are … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … program to collect samples from across the country to standardize the process. They noted this may be the first … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … Episode Transcript …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …
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