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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … confirmation bias, because it enables scientists to study how methanogenesis takes place in the context of the … Have Alternate Metabolic Pathways And there is something special about these new lineages recently tied to …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, … who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal … sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics … the total available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving …
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning … Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the …
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Mining Metagenomes for Cas Proteins
… the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked …
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Natural Prodcast Episode 4: Nancy Keller
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … this, is that I don’t have an awareness of how to go about studying them. Like to me, fungi are, you know, how do you … to work on the area of: how does the metabolome change, especially the secondary metabolome, of fungi in …
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Plant Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … I wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, though … myself a bit of that, too. Although we all have our specializations and the things that we dig into maybe a bit …
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Genome-centric view of carbon processing in thawing permafrost
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … assemblies when compared to long-reads-only assemblies, especially with CCS / Hi-Fi PacBio reads (i.e., reads with …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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