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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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JGI@25: The Little Alga That Could
… sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The … Community Science Program projects of all kinds,” noted Igor Grigoriev, head of the JGI’s Fungal & Algal Program, …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Simon Roux
… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … largest JGI-sequenced fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  … Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different soil …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… is the ultimate achievement. To get to this point requires rigorous research, written skill, above all else, … one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and together, they embarked on a … Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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Natural Prodcast Episode 9: Roger Linington
… about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the … the chemical landscape of any sample set. So if you have 100 organisms, and you ferment them under one set of …
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Natural Prodcast Episode 4: Nancy Keller
… first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … mostly coming out of China and India, very cheap for $100-$200. But you have so many contigs. This is a problem … Basidiomyetes might get to 50. Some of them go to over 100. There. That can be the problem. Whereas the bacteria, …
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Making a Lichen Together
… To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US … to DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a … by the National Science Foundation under Grant No. 1011101 to E.S. and J.M.L. …
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JGI announces first round of 2023 New Investigator awardees
… Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are accepted …
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Access to Rock Star Scientists
… my entire career.” Rhondene Wint, UC Merced JGI Mentors: Igor Grigoriev & Asaf Salamov, Fungal Program “Working at the JGI …
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Products
… vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene or multiple small genes assembled … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative …
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