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Natural Prodcast Episode 13: Francisco Barona Goméz
… have a better understanding of what is what. This is not new. It actually was first proposed by two authors called … that people are using in the clinics were kind of kidnapped from nature without paying attention to the … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at … record of the applicant.  Learn about the general review process or find details on the internal synthetic biology …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …
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Partnerships: Myco-Ed
… empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize … the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. …
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Natural Prodcast Episode 2: The Primer, Part 2
… were a really common source for people to try to find new medicines for a long time. But we know now that most of … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have … of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they are copies …
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Partners
… the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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Marine Microbe Contains Multitudes
… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … The metagenomes were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … work is a contribution of the Simons Collaboration on Ocean Processes and Ecology and the Daniel K. Inouye Center for …
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Natural Prodcast Episode 1: The Primer, Part 1
… of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … Secondary Metabolites Science Program here at JGI. It’s a new group formed under the director who has also got a long …
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Examples: Successful LOIs & Submissions
… Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … Metabolic processes and trophic interactions in Antarctic … CSP New Investigator Submission …
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The JGI Data Portal: Improving User Experience
… — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics … so our joint team started small, in the tradition of agile design and development,” said Linda Setchell, a Truss … more complex types of research without requiring them to build their own tools to do so.” The JGI/Truss team has …
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Offerings & Capabilities
… science by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users … To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell … in strain engineering and functional assays and supporting new methodologies to enhance the integration of various data …
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