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Axel Visel
… he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, where he developed … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about …
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Natural Prodcast Episode 23: Aaron Puri
… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … episode , you’ve heard a little about these, and Aaron and JGI are working together to try to understand the enzymology … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … items, the agenda went off the rails – according to plan but unbeknownst to Ray and most of the rest of the … recruitment of a new JGI Director, and towards the strategic co-localization of JGI and KBase at the …
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Graduate Students Get Thesis Research Opportunity at the JGI
… or national user facilities. As a result of the latest call , a total of 70 graduate students from 52 … SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also …
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Natural Prodcast Episode 4: Nancy Keller
… ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – … I know it’s early on, but you do have a project with the JGI. It’s doing some some fungal genome sequencing, I …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … transcriptomic technologies, as described in the JGI Strategic Plan. The present paper provides a foundational …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as … Plant Datasets …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Mo Kaze is a University of California (UC), Merced … it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: …
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Fungal & Algal Program
… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable plant biomass production as well as converting biomass into …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … processes, including carbon cycles. “Whether or not you planned it, viruses are most likely in your system and in … contigs. Since then, IMG/VR has grown exponentially. The latest release, IMG/VR v4 features over 15 million viral …
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