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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … for microbiome data science, and the development of new informatics tools specifically optimized for … annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual … by short final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, founders … I was so impressed with the work everyone has done.” The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … Secondary Metabolites Science Program here at JGI. It’s a new group formed under the director who has also got a long …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users … and Publication .   Except for applicants to the CSP New Investigator call, investigators may have existing …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and …
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Natural Prodcast Episode 11: Marnix Medema
… that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …
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Natural Prodcast Episode 16: Marcy Balunas
… in how the community itself works together to elicit new metabolite production. And we are also interested in how … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC … of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … by what’s called “find and grind”. So you would find some new source that you hadn’t explored before. Like, you know, … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible … data, the team noticed that a large percentage of Phytozome users who were seeking to download all the data associated …
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Project Management Office
The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and …
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Natural Prodcast Episode 2: The Primer, Part 2
… were a really common source for people to try to find new medicines for a long time. But we know now that most of … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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