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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse … The Microbial Program focuses on using advanced sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and including those associated with …
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Partners
… The JGI leverages its existing partnerships and develops others … science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for … facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data infrastructure …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … mining. We started to build the tools for natural product researchers that easily can identify secondary metabolite …
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Plant Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of … of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a … progress in the Design-Build-Test-Learn cycle, helping researchers optimize genetic systems. By enabling these …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … metadata’ across the files that are submitted by each scientific program,” he said. “If each kingdom submits the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … to make the technology available to the broad – the common scientific community. And that also goes true for the …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … of flavin independent monooxygenases with the help of JGI’s DNA synthesis grant. And that having a whole panel of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a … new collaborations with the FICUS program, through which researchers can access multiple DOE facilities with a single …
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