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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a … both as a liaison and advisory body, providing input on JGI policies and practices that support its user community. … advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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Biodesign
… The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … of its user community to NCBI as well as to the  data portals that the JGI manages, immediately after data …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, … in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … to be able to ever predict that, do you think? From your experience with working with all these different kinds of …
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Alabama Agricultural & Mechanical University Internship Program
… success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific issues. Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. Receive …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on …
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