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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), … of the global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. …
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Pathway and Gene Discovery from Natural Hosts and Organisms
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following … are expected to be familiar with this policy. Our aim in hosting an event is to build a stronger community. Our goal … every participant. We invite all those who participate to help us create safe and positive experiences for everyone. …
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JGI Hosts GPU Hackathon in May
Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … we will have available.” A maximum of six teams will be hosted at the Hackathon, with 1-2 mentors per team. … and the code owners will be able to get assistance from mentors and a team to port their code to a new …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial …
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … assembly from virus pools/plaques obtained from a single host, many unordered contigs. Assembly, annotation ( IMG ) …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and capabilities to enable great science that will help solve energy and environmental challenges. … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, …
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Genome‐based evolutionary history of Pseudomonas spp
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Tapping the treasure trove of atypical phages
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