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Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like these … of genes that it searches for and uses a rule-based system that classifies the things that it finds into which …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …
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Who We Are
National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome …
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Natural Prodcast Episode 20: Brian Bachmann
I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … buy– there wasn’t a encyclopedia of enzymes at Aldridge that I could use to buy green uricase or “Wittig-ase” or …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … harbored self-targeting CRISPR systems, metabolic modeling showed that  Ca . Huberiarchaeum would help fill in …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … I'm older, but-- [LAUGHS] I feel like a lot of people hedge their way into natural products by starting out in … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of …
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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Natural Prodcast Episode 12: Nadine Ziemert
… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … where– I know you really dug into the evolution on that system. Did that affect the work that you’re doing now? … mining. We started to build the tools for natural product researchers that easily can identify secondary metabolite …
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