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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 … and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel production. …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the … will be required to execute a 2024 version .  The recent updates were approved by the DOE to address the DNA …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … that builds off their early collaborations that could help crop breeders and researchers predict how crops and model … his JGI  postdoc ) was influential in “creating an early algorithm and developing it in order to talk about the …
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Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop breeders have harnessed … Aberystwyth University (UK); HudsonAlpha Institute for Biotechnology; University of Massachusetts Amherst; and, …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … a branch of machine learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks found in …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth … experience from almost 20 years in the Industrial Biotechnology private sector, as well as research expertise … fungicides, platform chemicals, cosmetics and new crop traits. Dr. Mouncey has successfully built integrated …
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JGI & KBase at PAG XXVII
XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … 6:20 PM Overview and Joint Genome Institute Plant Program Update 6:33 PM Comparative Genomic and Transcriptomic …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions … in animal poop.  “As an engineer, I think of poop as a biotech resource,” O’Malley said as she opened her talk at …
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