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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences … Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … and Editors’ Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The …
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Natural Prodcast Episode 19: Bill Fenical
… where I’m co-host-less, and then I’ll be introducing my new partner, who, if you’re listening carefully, you might … seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he and his … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a …
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Publication Policy
… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … As part of JGI’s production workflows, many staff are involved … products produced through all user projects accepted FY22 and later. … produced through all user projects accepted before FY22. …
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Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the highly-studied Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Light-powered CO2 fixation in a chloroplast mimic with natural and synthetic parts
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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of … and its hitchhiker  Ca . Huberiarchaeum. Both organisms are part of the DPANN superphylum of Archaea. This pair is …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways
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Plant Program
… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … Plant Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI … At a May 2025 workshop, a panel of experts recommended establishing a …
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