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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as … ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly support these … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… practices that support agriculture – such as efficiently using dwindling water resources and restoring and maintaining healthy soils … partnering with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … sustainable through applications of microbiome science; our water quality, our water resource needs are, are tightly … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … started by collecting samples from Yellowstone’s hot springs, an extreme environment with low genetic …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does …
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Getting to the core of the gut microbiome
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … and grouped those with similar microbial communities together. Those similarities, based on their ratios of small …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … understanding the predator-prey dynamics in these mats helps constrain models that estimate biogeochemical fluxes. …
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