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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… root cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations All MycoEd … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … contains most of the nitrogen and phosphorus. Researchers around the world are exploring ways of separating urine from …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms …
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Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments.
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern … biofuels and bioproducts. ( Learn more about OGG in  this episode of to the JGI podcast Genome Insider . ) Summary A recent paper published in Nature … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of …
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A Catalog of Reference Genomes from the Human Microbiome
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Gotta Catch 'Em Gall
… to raise their young in structures called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… and clouds of insects hover just above. Described as a “river of grass” that stretches some 580,000 square miles … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , …
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