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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, … calls. These documents have been shared with permission from the PIs who drafted them.  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. … specifically optimized for high-performance computing environments. …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as …
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Evolution and expression of core SWI/SNF genes in red algae
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Diversity, distribution, and expression of opsin genes in freshwater lakes
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage …
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Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions
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A Sorghum Pangenome Opens More Doors to Discovery
… holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … sequence for a line of sorghum, reference genomes have generated insight into drought tolerance, biomass production … Danforth Plant Science Center. Collaborators benefitted from sequencing resources as part of the Community Science …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … (BDO). To do so, the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 that … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the masters … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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