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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … and mentor is what we strive for,” Visel said. Practical Applications for Fungi Wint began working on the project … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is … Over thousands of years, farmers have selected for cereal plants without this shattering trait – referring to the …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, … nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass spectrometry …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … the team applied it to assemblies from both simulated and real microbial communities and examined the bins obtained. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … Microbiome Data Science group. “What makes this study really stand out from previous efforts is the remarkable …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are excited to start …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … the ocean, naively, as a sort of homogeneous medium. In reality, it’s not — there is variation of nutrients, …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of … potential applications. By recovering population genomes from metagenomes, we gain insights into microbial …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from …
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Unveiling the viral frontier in a warming world: temperature as a key ecological driver of viral diversity in subantarctic Chilean Patagonia fjords
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