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Special Initiatives & Programs
… seeks to reduce U.S. gasoline consumption by 20% within 10 years through increased efficiency and diversification of …
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Rex Malmstrom
… of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing … Nature Comm . 9 (1), 4881 Tsementzi, D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature …
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Mission
… scientific approaches to these challenges.     Our homepage video includes external footage from:  University of … for JGI resources and are engaged in active projects—each year. In addition, several thousand data users worldwide …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … deep-sea, oil-eating bacterium from a single cell. Several years later, the continuing single cell sequencing … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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Glacier ice archives nearly 15,000-year-old microbes and phages
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Scaling Up Existing Skill Sets
… shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: … even know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in Quantitative and Systems …
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Plant-Microbial Interactions Group
… 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … 10.1038/s41477-021-00915-z 10.1073/pnas.1907500116 10.1016/j.celrep.2019.04.054 …
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Viral Genomics Group
… uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — …
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JGI & KBase at PAG XXVII
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … and were able to identify the associated target genes in 11 of those. That work published in Nature Communications on … of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were found to …
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Mindfully Moving JGI
… sequencing labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three … heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the … miles away in another city and county began more than three years ago. For JGIers, the moving process began in 2017 with …
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Introducing New Members of the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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