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Partnerships: Myco-Ed
For consistency and to reduce teaching-lab costs, we have partnered with the Arizona Genomics Institute where high … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …
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Gut Fungi: Unexpected Source of Novel Chemicals
… genomes were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User Science …
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Frequently Asked Questions: Project Management
Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , … request a JGI Single Sign On account at https://signon.jgi.doe.gov . This account can then be used to submit proposals, … Phytozome (citation: https://doi.org/10.1093/nar/gkr944 ) The following tools are available for functional …
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Digging into Microbial Ecosystems Deep Underground
… these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … approved through a collaborative science initiative called Facilities Integrating Collaborations for User Science … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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Natural Prodcast Episode 8: Eric Schmidt
… metabolite peptides. And there are two ways that nature does this. The more well-known secondary metabolism systems … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … And because we’re a User Facility, if you’re interested in partnering with us, we want to hear from you! We have …
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Natural Prodcast Episode 1: The Primer, Part 1
… of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … And because we’re a User Facility, if you’re interested in partnering with us, we want to hear from you! We have …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska … best serve JGI users and promote equitable and high-quality scientific research.” In particular, she added, “I am …
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Natural Prodcast Episode 11: Marnix Medema
… up a tiny bit and just say what antiSMASH actually is and does. Marnix Medema: Yeah. So antiSMASH. We built antiSMASH … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they … That’s an amazing story. I’ll have to share that with my partner later. So thank you. Marnix Medema: With your …
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Natural Prodcast Episode 3: The Primer, Part 3
… we recognize and sticking another piece in, that usually doesn’t work, or if it does work, it doesn’t work as well, … what we intend to do. But in order to do that, we need partners. And so the Secondary Metabolites Science Program … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Viral Genomics Group
… by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral Genomics Group is … for uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions … S, et al. (2016) Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.  Nature . …
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Green Algae Reveal One mRNA Encodes Many Proteins
National Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental … Science user facility. The work was partly enabled by the “Facilities Integrating Collaborations for User Science” …
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New Lineages of Life Group
… the coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of … symbionts deeply branching in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in …
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