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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …
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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale call .  Process … or metabolomics should apply to one of the JGI’s  calls for user proposals . …
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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Natural Prodcast Episode 16: Marcy Balunas
… exposed to sun. And the bacteria that we collected– so the guides that we took with us had this huge pick and one of … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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Frequently Asked Questions: Proposal Submission
… institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries (Iran, North Korea, Cuba, and … begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to …
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Synthetic Biology Lab
… and assembly group: Our production group operates as user facility that aims to provide access to … the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the … methods for converting digital information from sequence databases into biotechnological or environmental …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … The developed strains represent an additional phase of user-accessible project types, in which DNA-based molecules …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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