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DAP-seq Drives Robust Mapping of Gene Regulation
… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … when and where lights turn on or machines start humming, gene regulation determines when and where genes are … applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about …
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Natural Prodcast Episode 2: The Primer, Part 2
… that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we really recognize, right?  ALISON: And I tend to think of microbes as being able to secrete a lot more things than … It’s an evolution of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Natural Prodcast Episode 3: The Primer, Part 3
… and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … developed to the point that you could understand the genetics of secondary metabolism, it became possible to do … proteins that are enzymes that are doing the reactions to generate secondary metabolites. ALISON: Sounds easy enough? …
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JGI Portals
… critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … available sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows …
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JGIota: Looking Back at Methane-Making Microbes
… gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant …
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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