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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … those viruses can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate … — you know, target specific microbes or change the behavior of this bacteria — most likely there is a virus …
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Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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Overview of the MOSAiC expedition: Ecosystem
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A sweet spot in marine ecosystems
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Trent Northen
… advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … bacterial polyphenol metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. … Couradeau E et al. Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun. 2019 …
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nifH pyrosequencing reveals the potential for location‐specific soil chemistry to influence N2‐fixing community dynamics
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Secondary Metabolites Program
… software tools, and from many users, so that the data is dynamic and ever-improving, and to facilitate discussion and …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals highlight … been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and …
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Kjiersten Fagnan
Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon Bell prize winning … Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … was the Salinispora genome project. And that was a JGI CSP project. They sequenced that genome for us at a time …
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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