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A Powerful Technique to Study Microbes, Now Easier
… with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Secondary Metabolites Program
… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea. This work represents an excellent showcase of the unique …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, … from a single investment will be reused for further science.  Notices Data Portal files will be inaccessible …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about our seven science program — their areas of focus, major initiatives and more.  …
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Finding the Fermenters
… an interactive browser that allows other researchers to study the genomes and predict the metabolic abilities of … One test was to predict traits of more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … the analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … of Utah’s Chemistry Department. We talked about carbon-fixing methylotrophs, quorum sensing, and inverse stable …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling … including PacBio and Illumina.  The synthetic biology user science group: The applications group is focus on developing …
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