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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … either delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … of talks relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  KBase Co-PI … for Shattering   In mid-2019, JGI and KBase will be co-located at Berkeley Lab’s Integrative Genomics Building …
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Clustering Categorical Data
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Plant Microbial Interactions Group
… rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … profiled the association between the plant, Medicago truncatula and an arbuscular mycorrhizae, Rhizophagus … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … of M. sinensis was recently published in Nature Communications by an international, multi-institutional team. The …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … groups of fungi. The 1KFG project has brought together over 400 proposal collaborators and co-authors with affiliations … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — for …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and the broader scientific community, and promotes communication and collaboration within the user community. … serves as the program's key external advisory panel and advocate of the program's strategy, operations and scientific …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …
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Annual Meeting 2027
… in March 2027 at the Oakland Convention Center. Check this page as further details become available. Sign up for our …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… lifecycle that uses a carbon fixation process known as the C4 pathway, which particularly helps plants thrive in warm, … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … You can learn more about how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has shifted …
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Making a Lichen Together
… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … The Impact Lichens are a model for inter-kingdom communication and cooperation. Their partnership is widespread and … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …
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