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Brachypodium: A monocot grass model system for plant biology
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User Programs
… projects that call for expansive sequencing, synthetic biology and metabolomics capabilities Investigators who have … by Letters of Intent. Proposals may include synthetic biology, sequencing and metabolomics. Proposals may include synthetic biology, transcriptomics, DAP-seq, and metabolomics. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New …
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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Examples: Successful LOIs & Submissions
… terpenoid-mediated plant environment interactions to enable advanced bioenergy crops … Characterization of simplified …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … coexist is key for understanding their impact on wider ecosystems, but these symbiotic interactions are difficult …
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Trent Northen
… founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics …
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Genome Insider
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Brachypodium: 20 years as a grass biology model system; the way forward?
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CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … The organisms on our planet encode these functions in their genomes, and the JGI is uniquely positioned to combine … and NERSC, JGI researchers  more than doubled the number of known protein families by using AI clustering algorithms to …
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Natural Prodcast Episode 6: Marc Chevrette
… the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … really interesting – when you can begin to see these guys building better weapons against one another. That gives us …
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