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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … technologies have led to an abundance of microbial genomes becoming available to the global research … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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Examples: Successful LOIs & Submissions
… for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … Microbial contributions to soil carbon storage during … Characterization of simplified soil communities with high and low carbon use efficiency across differing …
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Prokaryote Program User Advisory Committee
… on the effective management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee is …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall Loxahatchee …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) …
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CSP Large Scale Call
… or experimental design, click below to schedule time with Tanja Woyke, Deputy for User Programs. Technical and …
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Special Initiatives & Programs
… are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , … Proposals whose scope was not previously negotiated with the JGI will only be accepted pending available capacity, technical review and scope negotiation with the JGI.  Investigators with grants funded by DOE-BER …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in these …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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