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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in … mystery is that viruses can affect their prey in different ways. They have the capacity to kill outright, replicating … cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in these …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship program between Alabama … their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC …   Want to see past projects? Read more below         …   Internship Snapshots …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team …
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … sources and applies a standardized labeling scheme to better define the genomic information and ecosystems. These …
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DNA Synthesis Science User Advisory Committee
… The DNA Synthesis Science User Advisory Committee is chartered by the Program Head and report back to them. The Committee is chartered to render advice, … the programs. The Committee serves as the Program's key external advisory panel and advocates of Program strategy, …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered … . Since these bacteria lack complete biochemical pathways to break down plant material on their own, they likely … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … The Secondary Metabolites Program targets the vast and underexplored …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … This work was supported by the Department of Energy (DOE) Office of … Focus Area “Phenotypic response of the soil microbiome to environmental perturbations” to JKJ and KSH. A portion of …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … constantly infecting and reprogramming these microbes. A better understanding of virus-host interactions opens the … The machine learning model in the iPHoP program creates a way of evaluating these different routes. To train the …
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