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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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JGI Portals
… Portal was replaced with the Data Portal and sunset in 2026. The Genome Portal was designed to provide unified … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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Extracting the Secrets of Secondary Metabolites
… cluster. That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect … of Science User Facility, is supported under contract DE-AC02- 05CH11231. …
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Microbiome Data Science Team
… Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … In service of solutions that will impact society, the 2024 strategic plan introduces the JGI’s new vision to lead … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Simon Roux
… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … in a high-altitude watershed soil ecosystem. Microbiome 11, 237 Roux et al., 2023. iPHoP: An integrated machine …
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Finding the Fermenters
… more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … National Institute of Food and Agriculture grant 1019985, and the University of California, Davis Small Grant … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase …
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Ian Blaby
… in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for … eukaryotes. Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling … cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome …
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Products
… Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … change etc) and structural rearrangements, alignment files 114/114 Microbial Transcriptome RNA for expression profiling …
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The Expanding Universe of Methane Metabolisms in Archaea
… by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … Marker genes for diverse methane metabolisms Of the 10 MAGs reconstructed in the study, five were from … Symposium and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five … Institute of Aquatic Science and Technology in September 2021. Robinson stressed that the DNA Synthesis Science team’s …
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JGI announces 2025 Functional Genomics awardees
… and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted year-round ; the next deadline is Jan. 29, 2026.  …
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