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Events
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Simon Roux
… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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JGI Portals
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Microbiome Data Science Team
… Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is … of Energy operated under Contract No. DE-AC02-05CH11231. Work carried out at Lawrence Livermore National …
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Products
… vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … gone unrecognized. In total, these efforts produced nearly 10,000 new annotations of fungal mitochondrial genomes, the …
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Leo Baumgart
… embryo and root development." Plant Communications 6, no. 10 (2025). Kruse, Colin PS, Sara Calhoun, Bishoy Kamel, … sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors." Microbiology Resource … in bacterial gene regulation." Nature methods 18, no. 12 (2021): 1499-1505. Hasty, Jeff, Leo Alexander Baumgart, …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows …
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