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Ray Turner Completes Last Tour of Lab Duty at JGI
… 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … Lab. On June 24, in what was billed as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … how ecosystems work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable … and that’s going really well. And having the sequence data available for us to enable that research will have a …
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JGI Launches Latest Strategic Plan
… quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In … of the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with … include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a …
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JGI at the AGU Fall Meeting
… Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives … at Lawrence Berkeley National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics … , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … from environmental samples around the world. Much of the data had been generated from samples provided by more than …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following …
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JGI Workshops at PAG
… we will present current and ongoing developments at the JGI and KBase toward integrative biology and hear from … We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … early career researchers and new users, advise on data release and sharing policies, and help develop programs …
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