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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … drive innovations that could advance our understanding of Earth’s ecosystems. …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing and sequencing capabilities. … An assay used for profiling transcription factor binding sites across …
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Webinar: MycoCosm Tutorial
… 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … can support diploid genomes. Our annotation pipeline can call scaffolds as “primary” and “secondary”, and designates … alternative models. 32.  Q: For Annual CSP – How many letters of support from the community are really needed? A: …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … of California, Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental Molecular … this webinar hosted by EMSL to learn more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS … address some of the most pressing challenges of our time. For more information, please visit  …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … Collaborations for User Science” (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from all around the …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … for the next annual Community Science Program proposal call are due in Spring 2022. Byline: Massie S. Ballon       …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on …
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … Tips for High Molecular Weight DNA extraction: …
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