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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecolasp. Strain 4H-3-7+YE-5
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Uncovering Novel Genomes from Earth’s Microbiomes
… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate … dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel compared over …
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Forming Scientific Connections and Building Community
… (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC … JGI Annual Meeting. Through the DOE RENEW initiative, three of the interns – graduate students Peter Nguyen and …
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2024 Progress Report
… 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … culminated in a reference for the complex  sugarcane genome sequence. The JGI  partnered  with synchrotron user … only the chance to speak to our accomplishments of the last three years but to discuss the future activities of the JGI. …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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JGI@25: Solving the Mystery of the Missing Oil
… his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. … expertise led to the identification of a new “oil-seeking” species related to Oceanospirillales , work that also …
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Building Sphagnum Genomic Resources
… to have two high quality reference genomes for peat-forming species that occupy different microhabitats – Sphagnum … draft metagenome-assembled genomes for seven novel species of Acidobacteria through an approved CSP proposal. The researchers found that these species encode a sulfate reduction pathway, but also have …
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Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities
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