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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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Seven genome sequences of bacterial environmental isolates from the western coast of the Greenland Ice Sheet
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Draft genome sequence of Paenibacillus turicensis DSM 14349T from cerebrospinal fluid of a patient in Switzerland.
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing … from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive in … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Statement on the Use of Genomics Data
… of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to … the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to … will coordinate with NCBI to communicate improvements for facilitating the open use of data for the benefit of the …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory and …
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JGI@25: Using Team Science to Build Communities Around Data
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … for 35 species representing all major evolutionary lineages in the land plant tree of life.   As of the start …
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio …
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How To Use Our Systems
… and its curation in our core processes. This allows us to provide diverse scientific communities with large amounts … high-quality data and metadata, and connect our data to the broader biological data ecosystem. Our community of … tens of thousands of researchers. The JGI is always seeking to better understand our broader community of users. Each …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict … Joint Genome Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics …
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