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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most … plant biologist at West Virginia University (WVU), led the study’s international team, which included scientists from …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental biologist and current … at exactly what happens at all levels and developing models for cellular properties, communities and ecosystems.” …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … Energy. Students also worked with their mentors to practice and develop presentation skills as well as build their … language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … This research project was supported by a grant from Santa Barbara Cottage Hospital and the …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have … sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than 80 percent found to be … was supported by the International Consortium for Sugarcane Biotechnology, as well as the South Green Bioinformatics …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  …
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