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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … ) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … This work was supported by the U.S. Department of Energy Office of Science under Contract No. …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and analysis of …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … shared across all haloarchaea, along with the pool of genes considered the flexible genome content that was likely … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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