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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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UC Merced Interns Reflect on Their JGI Summer Projects
… research. The topics students worked on ranged far and wide — from implementing new data visualization tools, to … using natural language processing techniques to categorize genetic information. Learn more about their work here in a …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of algae? You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. … Grigoriev and Kuo recommend they apply through the JGI’s Community Science Program . …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research … The JGI offers these solutions to the worldwide scientific community through its  User Programs on a competitive, … can make phenazines, and which microbes are most capable of generating phenazine production.” This led to them …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … Genomes that Paved the Way This project stems from a Community Science Program proposal that Martin submitted in … with dozens of partners. “This was a tremendous community effort, with over 100 researchers who nominated …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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The Power of One, Amplified
… For example, they showed that the composition of the community was similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … indicating variation in gene flow between the analyzed community members. The Impact Though microbes help regulate …
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Jeremy Schmutz
… the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and … MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve … et al. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics 46: …
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Defining a Pan-Genome for Antarctic Archaea
… shed light on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … into other bacteria, thereby enhancing the scientific community’s understanding of how secondary metabolites are …
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