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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets … A:  Long-read metatranscriptome / RNA metagenomes are on our radar, but we don’t offer these at this time. Q:  How …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo … the big stuff, well, the little stuff! People hold office hours and you can pop in and ask them questions about all … STEM. Everyone is so happy to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC …
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Wringing everything out with bioprospecting
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to …
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An Earth Month Look at Sustainability Efforts at the JGI
… for the wider Berkeley Lab. “We’re shifting now to our net-zero strategy. And so we’re looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program manager for  … stations, rather than under desk trash bins . These encourage everyone to sort all waste into compost, recycling …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
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Four principles to establish a universal virus taxonomy
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High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada
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Hiroshi Otani
… Savchenko, A., and Eltis, L.D. (2016) The activity of CouR, a MarR family transcriptional regulator, is modulated … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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