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Microbial adaptability in changing environments
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Corymbia Genome Expands Terpene Synthesis Knowledge
… flavor of wine, terpenes are ubiquitous. A diverse group of plant-produced organic compounds, terpenes play key roles in plant growth, defense, and environmental interactions. … C. citriodora suggest that these plants synthesize a high level of secondary metabolites which play a part in biotic …
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Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle
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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
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Understanding Wildfire Recovery, Starting in Soil
… process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains … environments, actinobacteria play roles in both the carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Learning to Look
… a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival Many bacteria have CRISPR-Cas systems that incorporate short sequences from infecting …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… to the DOE mission, switchgrass is among the JGI Flagship Plants . Since 2007, the JGI has been working on identifying … The switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data … Plant Dataset …
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Forming Scientific Connections and Building Community
… learned so much in terms of scientific approach and as a plant biologist, I have learned so many techniques and … system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a JGI intern … W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great …
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Introducing New Members of the JGI User Executive Committee
… Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI … Additionally, she noted, “I would also like to offer my insights in promoting diversity, equity and inclusion (DEI) … shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in guiding JGI …
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Computationally Classifying Fungal Lifestyles
… nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … and evolution of  Dothideomycetes could provide more insights into how these fungi have adapted to stress and … clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S …
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