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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein … able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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Eelgrass Proves to Be Much Younger Than We Thought
… eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — … by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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JGI Earth Month: Wetlands Work in #TenHundredWords
… marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to … , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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UC Merced Interns Reflect on Their JGI Summer Projects
Energy. Students also worked with their mentors to practice and develop presentation skills as well as build their network in the field of genomics and scientific research. The topics students worked on ranged far and wide — from implementing new data visualization tools, to using natural language …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics … sequence information to BER funded activities of plant systems. We will describe how to apply for a project with …
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place January … from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … Community Science Program, and how you can use the KBase system to accelerate your plant genomics research. Click …
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