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… were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  …

Marianne is an affiliate researcher who uses metagenomics to study giant viruses in cold marine environments and is interested in analyzing genes that can impact the metabolism of their hosts. …

… of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. … T, et al. MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol. 2019;14: 704–714. 6. … Sci Rep. 2013;3: 1656. … Education … Selected Publications …

… cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae … that photosynthesizers share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …

… of on simulation codes. “JGI is one of the largest producers of environmental genomics data and has a strong … any smaller and we need to keep pace with changes in industry/DOE Advanced Scientific Computing Research (ASCR) facilities. It’s a …

Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Enabling the use of non-arable land for biomass production — that can be converted into biofuels and …

… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by … and the National Energy Research Scientific Computing Center (NERSC) …

… their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top … Biotechnology.  The work also led researchers to identify a gene related to seed dispersal in wild populations for the … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …